• A - Change font size:  A -   A +
  • Microbiome References

    The Microbiome and Mental Health: Looking Back, Moving Forward with Lessons from Allergic Diseases

    Authors and Abstract

    The gut microbiome and diet in psychiatry: focus on depression.

    Authors and Abstract

    Autoimmune diseases, gastrointestinal disorders and the microbiome in schizophrenia: more than a gut feeling.
    Severance EG1, Yolken RH2, Eaton WW3.
    Schizophr Res. 2014 Jul 14. pii: S0920-9964(14)00319-3. doi: 10.1016/j.schres.2014.06.027. [Epub ahead of print]

    Dietary modulation of the microbiome affects autoinflammatory disease.
    Lukens JR, Gurung P, Vogel P, Johnson GR, Carter RA, McGoldrick DJ, Bandi SR, Calabrese CR, Walle LV, Lamkanfi M, Kanneganti TD.
    Nature. 2014 Sep 28. doi: 10.1038/nature13788.

    The microbiota-gut-brain axis: neurobehavioral correlates, health and sociality.
    Montiel-Castro A. J, González-Cervantes R. M, Bravo-Ruiseco G., Pacheco-López G.
    Front Integr Neurosci. 2013 Oct 7;7:70. doi: 10.3389/fnint.2013.00070.

    Ten Putative Contributors to the Obesity Epidemic
    Crit Rev Food Sci Nutr. Nov 2009; 49(10): 868–913.
    doi: 10.1080/10408390903372599

    The gut microbiome: The role of a virtual organ in the endocrinology of the host.
    Evans J. M, Morris L. S, Marchesi J.
    J Endocrinol. 2013 Aug 28;218(3):R37-47. doi: 10.1530/JOE-13-0131.

    The role of the gut microbiota in nutrition and health.
    Flint H. J, Scott K. P, Louis P, Duncan S. H.
    Nat Rev Gastroenterol Hepatol. 2012 Oct;9(10):577-89.

    Role of the gut microbiota in defining human health
    Fujimura,K. E, Slusher, N. A, Cabana, M. D and Lynch, S. V.
    Expert Rev Anti Infect Ther. 2010 Apr;8(4):435-54. doi: 10.1586/eri.10.14.

    Effects of the gut microbiota on obesity and glucose homeostasis.
    Greiner T, Bäckhed F.
    Trends Endocrinol Metab. 2011 Apr;22(4):117-23. doi: 10.1016/j.tem.2011.01.002. PMID: 21353592

    Interactions between gut microbiota and host metabolism predisposing to obesity and diabetes.
    Musso G, Gambino R, Cassader M.
    Annu Rev Med. 2011;62:361-80. doi: 10.1146/annurev-med-012510-175505.

    Obesity and the gut microbiota.
    Flint H. J.
    J Clin Gastroenterol. 2011 Nov;45 Suppl:S128-32. doi: 10.1097/MCG.0b013e31821f44c4.

    Obesity, inflammation, and atherosclerosis. (Review)
    Rocha, V.Z.,Libby, P.
    Nature Reviews Cardiology 6, 399-409 (June 2009) doi:10.1038/nrcardio.2009.55

    Obesity, Diabetes, and Gut Microbiota:The hygiene hypothesis expanded?
    Musso, G., Gambino, R. Cass, M.
    Diabetes Care. 2010 Oct;33(10):2277-84. doi: 10.2337/dc10-0556.

    The gut microbiota, obesity and insulin resistance.
    Shen J, Obin MS, Zhao L.
    Mol Aspects Med. 2013 Feb;34(1):39-58. doi: 10.1016/j.mam.2012.11.001.

    Intestinal microbiota and obesity.
    Blaut M, Klaus S.
    Handb Exp Pharmacol. 2012;(209):251-73. doi: 10.1007/978-3-642-24716-3_11.

    Microbial Genes, Brain & Behaviour –Epigenetic Regulation of the Gut-Brain Axis.
    Stilling R. M1, Dinan T. G, Cryan J. F.
    Genes Brain Behav. 2014 Jan;13(1):69-86. doi: 10.1111/gbb.12109

    The role of microbes and autoimmunity in the pathogenesis of neuropsychiatric illness.
    Hornig M.
    Curr Opin Rheumatol. 2013 Jul;25(4):488-795. doi: 10.1097/BOR.0b013e32836208de.

    Current status and future promise of the Human microbiome
    Kim B. S, Jeon Y. S, Chun J.
    Pediatr Gastroenterol Hepatol Nutr. 2013 Jun;16(2):71-9. doi: 10.5223/pghn.2013.16.2.71.

    Role of the gut microbiota in human nutrition and metabolism.
    Ramakrishna B. S.
    J Gastroenterol Hepatol. 2013 Dec;28 Suppl 4:9-17. doi: 10.1111/jgh.12294.

    Role of intestinal bacteria in nutrient metabolism.
    Cummings, J H, Macfarlane, G. H.
    JPEN J Parenter Enteral Nutr. 1997 Nov-Dec;21(6):357-65.

    Complex glycan catabolism by the human gut microbiota: the bacteroidetes sus-like paradigm
    Martens, E. C, Koropatkin, N. M., Smith, T. J. Gordon, J. I.
    J Biol Chem. 2009 Sep 11;284(37):24673-7.

    Gut Microbiology – A relatively unexplored domain
    Brooks, S. P. J., Green-Johnson, J., Inglis, D., Uwiera,R. R. E., Kalmokoff, M.
    In: Biotechnology of Intestinal cultures

    Regulation of bacterial pathogenesis by intestinal short-chain fatty acids.
    Sun, Y., O’Riordan, M. X. D
    Adv Appl Microbiol. 2013;85:93-118. doi: 10.1016/B978-0-12-407672-3.00003-4.

    Infant antibiotic exposures and early-life body mass.
    Trasande L, Blustein J, Liu M, Corwin E, Cox LM, Blaser MJ.
    Int J Obes. 2013 January; 37(1): 16–23.doi: 10.1038/ijo.2012.132 PMCID: PMC3798029

    Therapeutic potential of faecal microbiota transplantation.
    Smits L. P, Bouter K. E, de Vos W. M, Borody T. J, Nieuwdorp M.
    Gastroenterology. 2013 Nov;145(5):946-53. doi: 10.1053/j.gastro.2013.08.058.

    Fecal microbiota transplantation and emerging applications.
    Borody T. J, Khoruts A.
    Nat Rev Gastroenterol Hepatol. 2011 Dec 20;9(2):88-96. doi: 10.1038/nrgastro.2011.244.

    Fecal microbiota transplantation: past, present and future.
    Aroniadis O. C, Brandt L. J.
    Curr Opin Gastroenterol. 2013 Jan;29(1):79-84. doi: 10.1097/MOG.0b013e32835a4b3e.

    Fecal microbiota transplant for recurrent clostridium difficile infection: Mayo clinic in Arizona experience.
    Patel N. C, Griesbach C. L, Dibaise J. K, Orenstein R.
    Mayo Clin Proc. 2013 Aug;88(8):799-805. doi: 10.1016/j.mayocp.2013.04.022.

    Moloney R. D1, Desbonnet L, Clarke G, Dinan T. G, Cryan J. F. The microbiome: stress, health and disease.
    Moloney R. D1, Desbonnet L, Clarke G, Dinan T. G, Cryan J. F.
    Mamm Genome. 2014 Feb;25(1-2):49-74. doi: 10.1007/s00335-013-9488-5.

    Effects of gut microbes on nutrient absorption and energy regulation
    Krajmalnik-Brown, R., Ilhan, Z-E., Kang, D-W, DiBaise, J. K.
    Nutr Clin Pract. 2012 Apr;27(2):201-14. doi: 10.1177/0884533611436116.

    The gut microbiota as an environmental factor that regulates fat storage.
    Backhed, F. Ding, H. Wang, T., Hooper, L. V., Koh, G. Y., Nagy, A. et al
    Proc Natl Acad Sci U S A. 2004 Nov 2;101(44):15718-23.

    Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination.
    Berer K, Mues M, Koutrolos M, Rasbi ZA, Boziki M, Johner C, Wekerle H, Krishnamoorthy G.
    Nature. 2011 Oct 26;479(7374):538-41. doi: 10.1038/nature10554.

    Gut microbiome-host interactions in health and disease.
    Kinross J. M, Darzi A. W, Nicholson J. K.
    Genome Med. 2011 Mar 4;3(3):14. doi: 10.1186/gm228.

    The human microbiome and autoimmunity.
    Proal A. D, Albert P. J, Marshall T. G.
    Curr Opin Rheumatol. 2013 Mar;25(2):234-40. doi: 10.1097/BOR.0b013e32835cedbf.

    Diet-induced dysbiosis of the intestinal microbiota and the effects on immunity and disease.
    Brown K, DeCoffe D, Molcan E, Gibson DL.
    Nutrients. 2012 Aug;4(8):1095-119.

    Regulation of inflammation by short chain fatty acids
    Vinolo, M. A. R, Rodrigues,H.G., Nachbar,R.T., Curi, R.
    Nutrients. 2011 Oct;3(10):858-76.

    The role of diet in triggering human inflammatory disorders in the modern age.
    Huang E. Y, Devkota S, Moscoso, D, Chang E. B, Leone, V. A.
    Microbes Infect. 2013 Nov;15(12):765-74. doi: 10.1016/j.micinf.2013.07.004.

    Richness of human gut microbiome correlates with metabolic markers.
    Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, et al
    Nature. 2013 Aug 29;500(7464):541-6. doi: 10.1038/nature12506.

    Dietary intervention impact on gut microbial gene richness.
    Cotillard A, Kennedy S. P, Kong L. C, Prifti E, Pons N, Le Chatelier, E et al
    Nature. 2013 Aug 29;500(7464):585-8. doi: 10.1038/nature12480.

    Vicious cycle composed of gut flora and visceral fat: a novel explanation of the initiation and progression of atherosclerosis.
    He Z. Q, Zhen Y, Liang C, Wang H, Wu Z. G
    Med Hypotheses. 2008;70(4):808-11.

    An obesity-associated gut microbiome with increased capacity for energy harvest.
    Turnbaugh P. J, Ley R. E, Mahowald M. A, Magrini V, Mardis E. R, Gordon J. I.
    Nature. 2006 Dec 21;444(7122):1027-31.

    The human gut microbiome: a review of the effect of obesity and surgically induced weight loss.
    Sweeney T. E, Morton J. M.
    JAMA Surg. 2013 Jun;148(6):563-9. doi: 10.1001/jamasurg.2013.5.

    Gut microbiota controls adipose tissue expansion, gut barrier and glucose
    metabolism: novel insights into molecular targets and interventions using prebiotics
    Geurts, L., Neyrinck, A.M., Delzenne, N.M., Knauf C., Cani P.D.
    Benef Microbes. 2014 Mar;5(1):3-17. doi: 10.3920/BM2012.0065.

    Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.
    Vrieze A, Van Nood E, Holleman F, Salojärvi J, Kootte R. S, Bartelsman J. F et al
    Gastroenterology. 2012 Oct;143(4):913-6.e7. doi: 10.1053/j.gastro.2012.06.031.

    Does chronic low-grade endotoxemia define susceptibility of obese humans to insulin resistance via dietary effects on gut microbiota?
    Kemp D. M
    Adipocyte. 2013 Jul 1;2(3):188-90. doi: 10.4161/adip.24776.

    Do we really know why diabetes remits after gastric bypass surgery?
    Laferrère B
    Endocrine. 2011 Oct;40(2):162-7. doi: 10.1007/s12020-011-9514-x.

    The importance of the gut microbiota after bariatric surgery.
    Aron-Wisnewsky J, Doré J, Clement K.
    Nat Rev Gastroenterol Hepatol. 2012 Oct;9(10):590-8. doi: 10.1038/nrgastro.2012.161.

    The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice.
    Turnbaugh P. J, Ridaura V. K, Faith J. J, Rey F. E, Knight R, Gordon J. I

    The HMP project: exploring the microbial part of ourselves in a changing world
    Turnbaugh, P. J., Ley, R. E., Hamady, M., Fraser-Liggett, C., Knight, R. Gordon, J. I.
    Trends Microbiol. Jan 2012; 20(1): 1–4. doi: 10.1016/j.tim.2011.10.004

    Shifts in clostridia, bacteroides and immunoglobulin-coating fecal bacteria associated with weight loss in obese adolescents.
    Nadal I, Santacruz A, Marcos A et al.
    Int J Obes (Lond). 2009 Jul;33(7):758-67. doi: 10.1038/ijo.2008.260.

    Composition of dietary fat source shapes gut microbiota architecture and alters host inflammatory mediators in mouse adipose tissue.
    Huang E. Y, Leone V. A, Devkota S, Wang Y, Brady M. J, Chang E. B.
    JPEN J Parenter Enteral Nutr. 2013 Nov;37(6):746-54. doi: 10.1177/0148607113486931.

    Dietary carbohydrates and health: do we still need the fibre concept?
    Cummings, J. H., Edmond, L. M., Magee E. A.
    Clinical Nutrition Supplements, Volume 1, Issue 2, 2004, Pages 5-17

    Physiological aspects of energy metabolism and gastrointestinal effects of carbohydrates.
    Elia M, Cummings J. H.
    Eur J Clin Nutr. 2007 Dec;61 Suppl 1:S40-74.

    Diet, gut microbiota and immune responses
    Kendle M Maslowski & Charles R Mackay
    Nat Immunol. 2011 Jan;12(1):5-9. doi: 10.1038/ni0111-5.

    Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans.
    Jumpertz R1, Le D. S, Turnbaugh P. J, Trinidad C, Bogardus C, Gordon J. I, Krakoff J.
    Am J Clin Nutr. 2011 Jul;94(1):58-65. doi: 10.3945/ajcn.110.010132.

    Crosstalk between the gut microbiota and the endocannabinoid system: impact on the gut barrier function and the adipose tissue.
    Cani P.D.
    Clin Microbiol Infect. 2012 Jul;18 Suppl 4:50-3.

    Comparison with ancestral diets suggests dense acellular carbohydrates promote an inflammatory microbiota, and may be the primary dietary cause of leptin resistance and obesity
    Spreadbury, I.
    Diabetes Metab Syndr Obes. 2012;5:175-89. doi: 10.2147/DMSO.S33473.

    Paleolithic diets as a model for prevention and treatment of Western disease.
    Lindeberg S.
    Am J Hum Biol. 2012 Mar-Apr;24(2):110-5. doi: 10.1002/ajhb.22218. Epub 2012 Jan 19.

    Should We Standardize the 1,700-Year-Old Fecal Microbiota Transplantation?
    Zhang, F., Luo, W., Shi, Y., Fan, Z. Ji, G
    Am J Gastroenterol 2012; 107:1755; doi:10.1038/ajg.2012.251

    The interplay between microbiome dynamics and pathogen dynamics in a murine model of Clostridium difficile Infection.
    Reeves A. E, Theriot C. M, Bergin I. L, Huffnagle G. B, Schloss P. D, Young V. B.
    Gut Microbes. 2011 May-Jun;2(3):145-58.

    Fecal microbiota transplantation: past, present and future.
    Aroniadis O. C, Brandt L. J.
    Curr Opin Gastroenterol. 2013 Jan;29(1):79-84. doi: 10.1097/MOG.0b013e32835a4b3e.

    The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism.
    den Besten, G.van Eunen, K., Groen, A. K, Venema, K., Reijngoud, D. J., Bakker, B. M.
    J Lipid Res. 2013 Sep;54(9):2325-40. doi: 10.1194/jlr.R036012.

    Systematic review: faecal microbiota transplantation therapy for digestive and nondigestive disorders in adults and children.
    Sha, S1, Liang, J, Chen, M, Xu, B, Liang, C, Wei, N, Wu, K.
    Aliment Pharmacol Ther. 2014 Mar 18. doi: 10.1111/apt.12699. [Epub ahead of print]

    Genes Of Human Longevity: An Endless Quest?
    Capri M, Santoro A, Garagnani P, Bacalini MG, Pirazzini C, Olivieri F, Procopio A, Salvioli S, Franceschi C
    Curr Vasc Pharmacol.2013 Dec 18. [Epub ahead of print]

    Microbes and the malnourished child.
    Prentice A. M, Nabwera H, Kwambana B, Antonio M, Moore SE.
    Sci Transl Med. 2013 Apr 10;5(180):180fs11. doi: 10.1126/scitranslmed.3006212.

    Gut microbiomes of Malawian twin pairs discordant for kwashiorkor.
    Smith M. I, Yatsunenko T, Manary M. J, Trehan I, Mkakosya R, Cheng J et al
    Science. 2013 Feb 1;339(6119):548-54. doi: 10.1126/science.1229000.

    Unravelling the effects of the environment and host genotype on the gut microbiome.
    Spor, A. Koren, O. Ley, R.
    Nat Rev Microbiol. 2011 Apr;9(4):279-90. doi: 10.1038/nrmicro2540.

    Turnbaugh, P. J., Ley, R. E., Hamady, M., Fraser-Liggett, C., Knight, R., Gordon, J. I.
    The HMP project: exploring the microbial part of ourselves in a changing world
    Nature. 2007 October 18; 449(7164): 804–810.

    Posted in References.

    Leave a Reply

    Your email address will not be published. Required fields are marked *


    You may use these HTML tags and attributes: <a href="" title=""> <abbr title=""> <acronym title=""> <b> <blockquote cite=""> <cite> <code> <del datetime=""> <em> <i> <q cite=""> <strike> <strong>